Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs6744281 chr2:180844382 G/A 0.000119 173 13.63 22.7 22.57 KM Plot
UCEC rs6745653 chr2:98289997 C/T 1.11E-6 174 25.67 18.88 8.65 KM Plot
UCEC rs6759271 chr2:180844303 T/C 0.000149 173 13.63 22.15 22.6 KM Plot
UCEC rs6759496 chr2:219065963 C/G 0.000133 173 4.5 17.53 22.85 KM Plot
UCEC rs67689570 chr5:77676843 T/C 6.68E-5 171 21.6 24.97 16.3 KM Plot
UCEC rs6781061 chr3:142799718 T/C 1.84E-12 172 22.57 22.77 4.5 KM Plot
UCEC rs6812041 chr4:57268643 C/G 0.00013 174 33.28 22.63 19.67 KM Plot
UCEC rs6820922 chr4:57295483 T/C 0.000121 171 23.8 19.53 23.13 KM Plot
UCEC rs6827132 chr4:183633697 A/G 1.21E-9 174 13.1 19.17 22.63 KM Plot
UCEC rs6827299 chr4:189098744 A/G 2.27E-13 174 4.33 20.17 22.93 KM Plot
UCEC rs6854326 chr4:57275909 T/C 0.000117 173 23.8 19.17 23.13 KM Plot
UCEC rs6857561 chr4:57193303 T/C 0.00013 171 23.8 19.35 18.47 KM Plot
UCEC rs6867673 chr5:77779125 A/G 1.85E-5 171 18.37 26.7 21.55 KM Plot
UCEC rs6896851 chr5:54406981 G/A 3.9E-7 174 21.3 27.78 20.33 KM Plot
UCEC rs6907991 chr6:25951260 C/T 5.22E-5 167 21.6 25.47 13.93 KM Plot